Index

_

__init__() (inferelator.crossvalidation_workflow.CrossValidationManager method)

A

add_gridsearch_parameter() (inferelator.crossvalidation_workflow.CrossValidationManager method) add_grouping_dropin() (inferelator.crossvalidation_workflow.CrossValidationManager method) add_grouping_dropout() (inferelator.crossvalidation_workflow.CrossValidationManager method)

add_preprocess_step() (inferelator.single_cell_workflow.SingleCellWorkflow method) add_size_subsampling() (inferelator.crossvalidation_workflow.CrossValidationManager method) AMUSRRegressionWorkflowMixin (class in inferelator.regression.amusr_regression)

B

BBSRRegressionWorkflowMixin (class in inferelator.regression.bbsr_python)

betas_sign (inferelator.postprocessing.InferelatorResults attribute) betas_stack (inferelator.postprocessing.InferelatorResults attribute)

C

combined_confidences (inferelator.postprocessing.InferelatorResults attribute)

create_task() (inferelator.amusr_workflow.MultitaskLearningWorkflow method) CrossValidationManager (class in inferelator.crossvalidation_workflow)

E

ElasticNetWorkflowMixin (class in inferelator.regression.elasticnet_python)

I

inferelator.amusr_workflow module inferelator.crossvalidation_workflow module inferelator.single_cell_workflow module

inferelator.tfa_workflow module inferelator.workflow module inferelator_workflow() (in module inferelator.workflow) InferelatorResults (class in inferelator.postprocessing)

M

module inferelator.amusr_workflow inferelator.crossvalidation_workflow inferelator.single_cell_workflow inferelator.tfa_workflow inferelator.workflow

MultitaskLearningWorkflow (class in inferelator.amusr_workflow)

N

name (inferelator.postprocessing.InferelatorResults attribute)

network (inferelator.postprocessing.InferelatorResults attribute)

R

run() (inferelator.single_cell_workflow.SingleCellWorkflow method) (inferelator.tfa_workflow.TFAWorkFlow method) (inferelator.workflow.WorkflowBase method)

S

set_count_minimum() (inferelator.single_cell_workflow.SingleCellWorkflow method) set_crossvalidation_parameters() (inferelator.workflow.WorkflowBase method) set_design_settings() (inferelator.tfa_workflow.TFAWorkFlow method) set_output_file_names() (inferelator.workflow.WorkflowBase static method) set_postprocessing_parameters() (inferelator.workflow.WorkflowBase method) set_regression_parameters() (inferelator.regression.amusr_regression.AMUSRRegressionWorkflowMixin method) (inferelator.regression.bbsr_python.BBSRRegressionWorkflowMixin method) (inferelator.regression.elasticnet_python.ElasticNetWorkflowMixin method) (inferelator.regression.sklearn_regression.SKLearnWorkflowMixin method) (inferelator.regression.stability_selection.StARSWorkflowMixin method)

set_run_parameters() (inferelator.workflow.WorkflowBase method) set_shuffle_parameters() (inferelator.workflow.WorkflowBase method) set_task_filters() (inferelator.amusr_workflow.MultitaskLearningWorkflow method) set_tfa() (inferelator.tfa_workflow.TFAWorkFlow method) SingleCellWorkflow (class in inferelator.single_cell_workflow) SKLearnWorkflowMixin (class in inferelator.regression.sklearn_regression) StARSWorkflowMixin (class in inferelator.regression.stability_selection)

T

tasks (inferelator.postprocessing.InferelatorResults attribute)

TFAWorkFlow (class in inferelator.tfa_workflow)

W

WorkflowBase (class in inferelator.workflow)